Shopify is a complete commerce platform and is a subscription-based online-selling platform. Shopify store owners can sell their products online or in physical locations using POS (point of sale ) applications. If you are a Shopify store owner or merchant with both an online and physical store. Then, your inventory and stock should be managed properly. 

Thus, cloud-based software helps you to manage your business. Most accounting software doesn’t directly integrate with Shopify. You may have to find an appropriate accounting solution for your Shopify store. 

There ‌ thousands of accounting software for the Shopify stores available, but choosing the right one can be tricky.  So, how do you find out which ones are good for your business?To make the choice easier for you and your Shopify business, here in this article you will find Benefits, essential features and best software for shopify.

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What does the best accounting software for Shopify have?

The best accounting software for Shopify should have at least the following three things:

  • Easy to integrate with other tools
  • Able to meet current and future reporting requirements
  • Easily accessible on all devices

Essential Features of Accounting Software for Shopify

Each accounting software solution has its own unique features. The following are the list of the common features that any accounting software should have for Shopify:

  1. Core Accounting
  2. Payment Processing
  3. Inventory Management
  4. Sales Tax
  5. Invoicing

Benefits of Accounting Software for Shopify

If you have business experience, then you might have initially used a spreadsheet or excel to track your business. That’s quite a challenge as the business grows. It will almost ‌ certainly become difficult to stay on top of all business ‌transactions with the manual accounting system.

Here are the key benefits of accounting software for Shopify:

  • Saves time
  • Instantly generates key financial reports
  • Syncs all your financial data
  • Promotes data accuracy
  • Produces professional-looking reports and financial statements
  • Simplifies payroll
  • Gives detailed insights
  • Streamlines tax filing
  • Reduces inventory errors

Top 5 Accounting Software Solutions for Shopify


Quickbooks online is great accounting software with multiple features. It is cloud base software that can be accessed anywhere you have an internet connection. This software helps businesses access product and features updates, automatic data backup, and also restore business data from backup.


  • Invoicing
  • Expenses
  • Banks Feeds
  • GST & VAT
  • Inventory
  • Capture & organize receipts
  • Mobile App
  • Insight and reports
  • Multi-currency support
  • Security


  • Simple Start:  US$ 4.80/month
  • Essentials: US $7.50/month
  • Plus: US$ 10/month

Freshbooks is a cloud-based accounting software ‌ originally launched in 2003. It is used by millions of small business owners all over the world. Business FreshBooks accounting software to manage invoicing, recurring billing, accounting, and payroll.


  • Accounting
  • Estimates
  • Mileage Tracking
  • Payments
  • Proposals
  • Time tracking
  • Clients
  • Expenses
  • Invoicing
  • Mobile
  • Projects
  • Reports


  • Lite: $6.month
  • Plus: $10/month
  • Premium: $20/month
  • Select: custom pricing

Xero is a cloud-based accounting software platform for small businesses. Through Xero, small business owners and their advisors have access to real-time financial data at any time, anywhere, and on any device. Xero offers an ecosystem of over 1,000 third-party apps and 300 plus connections to banks and other financial partners.

 In 2020 and 2021, Xero was included in the Bloomberg Gender-Equality Index, and in 2020, Xero was recognized by IDC MarketScape as a leader in its worldwide SaaS and cloud-enabled small business finance and accounting applications vendor assessment.


  • Pay bills                                       –
  •  Claim expenses
  • Bank connections                       
  • Bank reconciliation
  • Accept payments                         
  • rack projects
  • Manage contacts                          
  • Capture data
  • Pay runs                                       
  • Files 
  • Reporting                                     
  • Inventory
  • Send invoices                               
  • Multi-currency
  • Purchase orders
  • Quotes 
  • Sales tax
  • Analytics plus


  • Starter- $22USD per month
  • Standard- $35USD per month
  • Premium- $47 USD per month
zoho invoice

As an official Zoho Partner, ScaleUp Project has developed a unique expertise on the Zoho One suite of applications, based on more than 25 years of Business, IT and Communication experience. Customer Intelligence, CRM, Communication, Social Media, Website Implementation, Custom Developments, Business Process Optimization, Integration and Automation are the key competencies you can benefit from.


  • Invoicing
  • Estimates
  • Client portal
  • Expenses
  • Bills
  • Banking
  • Projects
  • Inventory
  • Sales Orders
  • Purchase Orders
  • Tax
  • Online Payments
  • Reporting
  • Automation
  • Documents
  • Vendor Portal
  • Mobile


  • Free: $0
  • Standard: $12 per organization/month
  • Professional: $24 per organization/month
  • Premium: $36 per organization/month

Sage is the global market leader for technology that helps small and medium businesses perform at their best. The sage is trusted by millions of customers worldwide to deliver the best cloud technology and support with our partners to manage finances, operations, and people. It helps people be the best they can be.


  • Invoicing
  • Payments
  • Track expenses
  • Bank reconciliation
  • Multi-currency
  • Snap and post receipts
  • Billing
  • Accounts Receivable
  • Accounts payable
  • Stock management
  • Mac compatible


  • Sage accounting Start: $10 /month
  • Sage Accounting: $7.50 /month


Shopify is one of the biggest eCommerce platforms and has some great built-in features to get you started. But their financial reporting has some complexities, ‌ limitations. Thus, Shopify store owners need great accounting software that can help them plan for the future.

Every accounting software has its own pros and cons. As a Shopify store owner, you have to keep your store stocked and running smoothly. But don’t spend hours each day recording every transaction. Instead, make use of modern technology and use a software solution for your financial records and accounting.

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